Simoneau J, Dumontier S, Gosselin R, Scott MS, 2019, Current RNA-seq methodology reporting limits reproducibility, Briefings in Bioinformatics.
Please stop using Tophat https://t.co/Es4ohxOEyx Cole and I developed the method in *2008*. It was greatly improved in TopHat2 then HISAT & HISAT2. There is no reason to use it anymore. I have been saying this for years yet it has more citations this year than last #methodsmatter— Lior Pachter (@lpachter) 2017年12月2日